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Registro Completo |
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Biblioteca(s): |
Embrapa Mandioca e Fruticultura. |
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Data corrente: |
13/05/2020 |
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Data da última atualização: |
15/07/2020 |
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Tipo da produção científica: |
Artigo em Periódico Indexado |
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Autoria: |
CARMO, C. D. do; SOUSA, M. B. e; BRITO, A. C.; OLIVEIRA, E. J. de. |
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Afiliação: |
CÁTIA DIAS DO CARMO; MASSAINE BANDEIRA E SOUSA; ANA CARLA BRITO; EDER JORGE DE OLIVEIRA, CNPMF. |
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Título: |
Genome-wide association studies for waxy starch in cassava. |
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Ano de publicação: |
2020 |
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Fonte/Imprenta: |
Euphytica, v. 216, n. 82, 2020. |
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DOI: |
https://doi.org/10.1007/s10681-020-02615- |
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Idioma: |
Português |
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Conteúdo: |
Cassava (Manihot esculenta Crantz) is an important crop for starch production, and recently much effort has been directed towards improving its starch properties. Waxy cassava starch has some advantages over starch from other sources due to its neutral flavor and pasting properties. The genetic inheritance of the waxy starch phenotype is considered to be monogenic and recessive; however, it is possible that other genomic regions contribute to the waxy phenotype. The aim of this study was to evaluate the power of genome-wide association studies (GWAS) to detect variants related to waxy starch and to identify alternative genes or genomic regions. For this purpose, a set of 382 samples (waxy and non-waxy) was analyzed using a panel of 20,956 single nucleotide polymorphisms (SNPs). All genotypes were evaluated in relation to the presence of waxy starch, determined using the 2% iodine test. The GWAS was performed using the retrospective CAse?control Retrospective Association Testing (CARAT) model. Kinship and population structure were also investigated and added to the model. Ten SNPs were found to be significant and located on chromosome 2 and co-located in genomic regions. The significant SNPs are in a region near the Granule-bound starch synthase I (GBSSI) and Beta-amylase genes. Additive and epistatic effects were also found among the significant SNPs, and these need to be better investigated in segregant populations of waxy sources. The regions and genes identified in this work may drive further studies and reveal biological processes related to the waxy phenotype. MenosCassava (Manihot esculenta Crantz) is an important crop for starch production, and recently much effort has been directed towards improving its starch properties. Waxy cassava starch has some advantages over starch from other sources due to its neutral flavor and pasting properties. The genetic inheritance of the waxy starch phenotype is considered to be monogenic and recessive; however, it is possible that other genomic regions contribute to the waxy phenotype. The aim of this study was to evaluate the power of genome-wide association studies (GWAS) to detect variants related to waxy starch and to identify alternative genes or genomic regions. For this purpose, a set of 382 samples (waxy and non-waxy) was analyzed using a panel of 20,956 single nucleotide polymorphisms (SNPs). All genotypes were evaluated in relation to the presence of waxy starch, determined using the 2% iodine test. The GWAS was performed using the retrospective CAse?control Retrospective Association Testing (CARAT) model. Kinship and population structure were also investigated and added to the model. Ten SNPs were found to be significant and located on chromosome 2 and co-located in genomic regions. The significant SNPs are in a region near the Granule-bound starch synthase I (GBSSI) and Beta-amylase genes. Additive and epistatic effects were also found among the significant SNPs, and these need to be better investigated in segregant populations of waxy sources. The regions and genes identified in this w... Mostrar Tudo |
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Thesagro: |
Mandioca. |
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Thesaurus Nal: |
Cassava. |
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Categoria do assunto: |
-- |
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Marc: |
LEADER 02137naa a2200193 a 4500
001 2122286
005 2020-07-15
008 2020 bl uuuu u00u1 u #d
024 7 $ahttps://doi.org/10.1007/s10681-020-02615-$2DOI
100 1 $aCARMO, C. D. do
245 $aGenome-wide association studies for waxy starch in cassava.$h[electronic resource]
260 $c2020
520 $aCassava (Manihot esculenta Crantz) is an important crop for starch production, and recently much effort has been directed towards improving its starch properties. Waxy cassava starch has some advantages over starch from other sources due to its neutral flavor and pasting properties. The genetic inheritance of the waxy starch phenotype is considered to be monogenic and recessive; however, it is possible that other genomic regions contribute to the waxy phenotype. The aim of this study was to evaluate the power of genome-wide association studies (GWAS) to detect variants related to waxy starch and to identify alternative genes or genomic regions. For this purpose, a set of 382 samples (waxy and non-waxy) was analyzed using a panel of 20,956 single nucleotide polymorphisms (SNPs). All genotypes were evaluated in relation to the presence of waxy starch, determined using the 2% iodine test. The GWAS was performed using the retrospective CAse?control Retrospective Association Testing (CARAT) model. Kinship and population structure were also investigated and added to the model. Ten SNPs were found to be significant and located on chromosome 2 and co-located in genomic regions. The significant SNPs are in a region near the Granule-bound starch synthase I (GBSSI) and Beta-amylase genes. Additive and epistatic effects were also found among the significant SNPs, and these need to be better investigated in segregant populations of waxy sources. The regions and genes identified in this work may drive further studies and reveal biological processes related to the waxy phenotype.
650 $aCassava
650 $aMandioca
700 1 $aSOUSA, M. B. e
700 1 $aBRITO, A. C.
700 1 $aOLIVEIRA, E. J. de
773 $tEuphytica$gv. 216, n. 82, 2020.
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Registro original: |
Embrapa Mandioca e Fruticultura (CNPMF) |
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| Registros recuperados : 38 | |
| 10. |  | SOUSA, M. B. e; SILVA, K. J. D. e; ROCHA, M. de M.; NEVES, A. C. das. Estimativas de parâmetros genéticos em linhagens de feijão-caupi nos municípios de Balsas, MA e Primavera do Leste, MT. In: CONGRESSO NACIONAL DE FEIJÃO-CAUPI, 3., 2013, Recife. Feijão-Caupi como alternativa sustentável para os sistemas produtivos familiares e empresariais. Recife: IPA, 2013. CONAC 2012. Disponível em: http://www.conac2012.org/resumos/pdf/132a.pdf. Acesso em: 22 jul. 2013.| Tipo: Artigo em Anais de Congresso |
| Biblioteca(s): Embrapa Meio-Norte. |
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| 11. | | SILVA, E. M. da; DINIZ, R. P.; SOUSA, M. B. e; BRAATZ, L. R.; OLIVEIRA, E. J. de. Geração de clones superiores de mandioca em progênies F1, S1 e S2 In: JORNADA CIENTÍFICA EMBRAPA MANDIOCA E FRUTICULTURA, 13., 2019. Foco e valor : resumos. Cruz das Almas, BA: Embrapa Mandioca e Fruticultura,2019. 119 p. il.| Tipo: Resumo em Anais de Congresso |
| Biblioteca(s): Embrapa Mandioca e Fruticultura. |
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| 13. | | SOUSA, M. B. e; SILVA, K. J. D. e; ROCHA, M. de M.; MENEZES JUNIOR, J. A. de; LIMA, L. R. L. Adaptabilidade e estabilidade produtiva em linhagens elite de feijão-caupi de porte semiprostrado no Cerrado do Brasil. In: CONGRESSO NACIONAL DE FEIJÃO-CAUPI, 4., 2016, Sorriso. Feijão-caupi: avanços e desafios tecnológicos e de mercado: resumos. Brasília, DF: Embrapa, 2016. p. 133. Na publicação: Kaesel Jackson Damasceno-Silva.| Tipo: Resumo em Anais de Congresso |
| Biblioteca(s): Embrapa Meio-Norte. |
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| 14. | | SOUSA, M. B. e; SILVA, K. J. D. e; ROCHA, M. de M.; MENEZES JUNIOR, J. A. de; LIMA, L. R. L. Adaptability and yield stability of cowpea elite lines of semi-prostrate growth habit in the cerrado biome. Revista Ciência Agronômica, v. 48, n. 5, Esp., p. 832-839, 2017.| Tipo: Artigo em Periódico Indexado | Circulação/Nível: A - 2 |
| Biblioteca(s): Embrapa Meio-Norte. |
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| 17. | | BISPO, V. R. de S.; SOUSA, M. B. e; SOUZA, G. D. de; CARVALHO, R. R. B. de; OLIVEIRA, L. A. de; OLIVEIRA, E. J. de. Classificação de genótipos de mandioca quanto à presença de compostos cianogênicos nas raízes via espectroscopia na região do visível (VIS) e infravermelho próximo (NIR). In: JORNADA CIENTÍFICA EMBRAPA MANDIOCA E FRUTICULTURA, 13., 2019. Foco e valor : resumos. Cruz das Almas, BA: Embrapa Mandioca e Fruticultura,2019. 119 p. il.| Tipo: Resumo em Anais de Congresso |
| Biblioteca(s): Embrapa Mandioca e Fruticultura. |
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| 18. | | SOUSA, M. B. e; SILVA, K. J. D. e; ROCHA, M. de M.; MENEZES JUNIOR, J. A. de; LIMA, L. R. L. Metodologias para análise de adaptabilidade e estabilidade fenotípica de linhagens-elite de feijão-caupi. In: CONGRESSO NACIONAL DE FEIJÃO-CAUPI, 4., 2016, Sorriso. Feijão-caupi: avanços e desafios tecnológicos e de mercado: resumos. Brasília, DF: Embrapa, 2016. p. 180. Na publicação: KAESEL JACKSON DAMASCENO-SILVA| Tipo: Resumo em Anais de Congresso |
| Biblioteca(s): Embrapa Meio-Norte. |
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| 20. | | ANDRADE, L. R. B. de; SOUSA, M. B. e; WOLFE, M.; JANNINK, J. L.; RESENDE, M. D. V. de; AZEVEDO, C. F.; OLIVEIRA, E. J. de. Increasing cassava root yield: additive-dominant genetic models for selection of parents and clones. Frontiers in Plant Science, v. 13, article 1071156, 2022.| Tipo: Artigo em Periódico Indexado | Circulação/Nível: A - 1 |
| Biblioteca(s): Embrapa Café. |
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| Registros recuperados : 38 | |
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| Nenhum registro encontrado para a expressão de busca informada. |
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